You can find all lab software/simulations/analysis code repositories at Github following the link: Git

Research Students GitHub Projects: Student-GitHub-Projects

Important & Interesting project mentions:

• Android utility app: This project was focused on development of android application with several use case utilities ####https://github.com/spawar2/Android-Utility-App-#### [Java: android.content.Context, android.support.test.InstrumentationRegistry, android.support.test.runner.AndroidJUnit4, org.junit.Test, org.junit.runner.RunWith] https://csds.gsu.edu/^^^

• A PHP, MySQL based online shopping portal: This project was focused on development of online shopping portal similar to Amazon and ebay Demo ####https://github.com/spawar2/Final_Project_PHP_SQL####[PHP, CSS, HTML, JavaScript: mysql_import.sql]^^^

• Machine learning for selection and classification of HIV PR resistance: [*2018:1] [**2018:9, 10,11]This project was focused on applying neural network architecture on HIV deep sequencing data BioMed Central, IF=3.1 BMC Bioinformatics Paper. ####, collaboration with Dr. Harrison and Dr. Weber, Georgia State University, Atlanta, USA. https://csds.gsu.edu/profile/robert-harrison/ https://cas.gsu.edu/profile/irene-weber/ [MATHLAB, R, Python: numpy, sklearn.model, pylab, sklearn.decomposition] https://github.com/spawar2/HIV_Machine_Learning_Techniques#### PUBLICATION: Analysis of drug resistance in HIV protease Poster Link, Poster Link^^^

• Java-platform-to-create-logic-circuit to evaluate-bolean-expression: This project was focused on developing a java platform to evaluate bolean expressions from computer architecture ####https://github.com/spawar2/Computer-Architecture–Java-platform-to-create-logic-circuit–evaluate-bolean-expression#### https://csds.gsu.edu/^^^

• Java_SQL_MiceExperiment_Record_Tracking_Software: This project was focused on development of a java gui with record tracking features Demo, collaboration with Dr. Batra, Georgia State University, Atlanta, USA  https://www.linkedin.com/in/harshul-batra/####https://github.com/spawar2/Java_SQL_MiceExperiment_Record_Tracking_Software                     App

• #### [Java: javax.swing.JFrame, javax.swing.JOptionPane, javax.swing.table.DefaultTableModel, javax.swing.table.TableModel, java.sql., javax.swing., net.proteanit.sql.DbUtils, java.sql.Connection, java.sql.Statement, java.sql.SQLException, java.util.ArrayList] Future Science OA PUBLICATION: RodentSQL: a software suite for colony management of animal protocols^^^

• A PHP, MySQL based electronic record keeping cloud system: This project was focused on developing electronic record keeping cloud system Demo ####https://github.com/spawar2/Electronic-Cloud-Notebook–PHP–MySQL–Apache####, collaboration with Dr. Batra, Georgia State University, Atlanta, USA. https://www.linkedin.com/in/harshul-batra/ Journal of Engineering and Technology ResearchPUBLICATION: Online electronic laboratory notebook: A secured cloud storage system scripted in Hypertext Pre-processor (PHP) programming language^^^

• Glycan-to-DNA-Mapping-Web-Server: This project was focused on developing a python based web platform to handle Glycan-to-DNA-Mapping quiries Demo, [Python], collaboration with Dr. Shukkor, Georgia State University, Atlanta, USA.  ####https://github.com/spawar2/Glycan-to-DNA-Mapping-Web-Server#### bioRxiv PUBLICATION: DNA Encoded Glycan Libraries as a next-generation tool for the study of glycan-protein interactions^^^

• Patient flow simulation in EMS department: This project was focused on developing a devs-java based EMS simulation to address ED over crowding Demo, [Java: DEVSJAVALab, simView., java.awt., java.io., genDevs.modeling., genDevs.simulation., GenCol.]####https://github.com/spawar2/Devs_Java_Patient_Flow_SimulationinEMS####, collaboration with Dr. Stanam, University of Iowa, Iowa City, USA. https://www.linkedin.com/in/aditya-stanam-07bbb819/ Springer Bioinformatics and Biomedical Engineering PUBLICATION: Developing a DEVS-JAVA Model to Simulate and Pre-test Changes to Emergency Care Delivery in a Safe and Efficient Manner^^^

• Head-Neck-Cancer–ROC–SVM–KM–Expression-Analysis: This project was focused on support vector machine analysis of HNC patients ####https://github.com/spawar2/Head-Neck-Cancer–ROC–SVM–KM–Expression-Analysis####, collaboration with Dr. Stanam, University of Iowa, Iowa City, USA. https://www.linkedin.com/in/aditya-stanam-07bbb819/ Springer Journal of Maxillofacial and Oral Surgery PUBLICATION: A Six-Gene-Based Prognostic Model Predicts Survival in Head and Neck Squamous Cell Carcinoma Patients^^^

• Interleukin_Pathway_Survival_Gene_Expression_Analysis: [*2019:10]. [**2019: 8].This project was focused on gene expression analysis of Interleukin_Pathway genes [R: Biobase, GEOquery, survminer, survival] collaboration with Dr. Stanam, University of Iowa, Iowa City, USA. https://www.linkedin.com/in/aditya-stanam-07bbb819/ https://sites.gsu.edu/bgsa/ ####https://github.com/spawar2/Interleukin_Pathway_Survival_Gene_Expression_Analysis#### American Association of Cancer Research AACR PUBLICATION: Predicting the prognosis for cancer patients with interleukins gene expression level Poster Link^^^

• Face-Recognition-Python: This project was focused on utilizing open CV python for facial recognition [Python: cv2, sys]. ####https://github.com/spawar2/Face-Recognition-Python####^

• Forcasting-pipelines: This project was focused on developing 3 Forcasting-pipelines with time series data [R: ForeCA] ####https://github.com/spawar2/Forcasting-pipelines#### Springer Proceedings of Sixth International Congress on Information and Communication Technology PUBLICATION: Techniques of Time Series Modeling in Complex Systems^^^

• Random-Forest-for-Ovarian-Breast-Cancer-Patients: [**2023: 1].This project was focused on developing a biomarker utilizing random forest technique [R: GEOquery, Biobase, preprocessCore, multiClust]  ####https://github.com/spawar2/Random-Forest-on-Ovarian-Breast-Cancer-Patients#### Poster Link, Presentation, PPT^

• GeneSearch: This project was focused on developing a java gui to search genes from public repositories Java ####https://github.com/spawar2/GeneSearch####, collaboration with Dr. Chung-dar Lu, Georgia State University, Atlanta, USA. https://www.researchgate.net/profile/Chung-Dar-Lu^^^

• Clustering_Analysis_Cancer_Techniques [*2020:5] [**2020:6]: This project was focused on developing a biomarker tool utilizing clustering techniques [R: GEOquery, Biobase, preprocessCore, multiClust, ctc, gplots, dendextend, graphics, grDevices, amap] ####https://github.com/spawar2/Clustering_Analysis_Cancer#### Springer Bioinformatics and Biomedical Engineering PUBLICATION: Clustering Reveals Common Check-Point and Growth Factor Receptor Genes Expressed in Six Different Cancer Types, Poster Link, Presentation, PPT^^^

• Electric scooter for overcoming transportation and pollution problems: [*2021:4], ####https://devpost.com/software/ebird####. Prototype selected for Collegiate Cup Competition and TYE University Competition Qualifying Round 2019 and Entrepreneurship and Innovation Institute (ENI) Mentor Program PUBLICATION: Springer Sustainable Intelligent Systems, Poster Link^^^

• Random_Forest_Classfication_Renal_Cell_Carcinoma: This project was focused on developing a biomarker tool utilizing random forest [R: forcats, randomForest] ####https://github.com/spawar2/Random_Forest_Renal_Cell_Carcinoma####, collaboration with Dr. Lahiri, Sunway University, Malaysia.  https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en https://github.com/rushikeshchopaderc https://in.linkedin.com/in/rushikesh-chopade-88470615b. This project in collaboration with Rushikesh Chopade Undergraduate student: Indian Institute of Technology (IIT), Kharagpur, India. Presentation, PPT, Association for Computing Machinery ACM PUBLICATION: Machine learning for identification and characterization of molecular gene signatures in progression of benign tumors^

• COVID19-Temperature-Dashboard: This project was focused on understanding relationship between COVID19-Temperature medRxiv Paper, Demo, [R:shiny, highcharter, dplyr, UI, Server] ####https://github.com/spawar2/COVID19-Temperature-Dashboard####https://yalegenomics.shinyapps.io/deployment/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931^

• Regression-Analysis-Alzheimers-Disease: This project was focused on utilizing machine learning tools for feature classification in Alzheimers, [R: MASS, car, glm.predict] ####https://github.com/spawar2/Regression-Alzheimers-Disease####^

• Image augmentations: [Python: keras.datasets, mnist, models, layers, tensorflow, Sequential, Dense, Conv2D, Dropout, Flatten, MaxPooling2D]. #####https://github.com/spawar2/NLP-Challenge#####^^^

• Machine Learning Classification Pulmonary-Embolism-Master: This project was focused on utilizing machine learning tools for feature classification in Embolism [Python: numpy, sklearn, pandas, os, MATPLOTLIB]. ####https://github.com/spawar2/Pulmonary-Embolism-Master####^^^

• DARTO: Program to identify orthologs for genes:  [Python: os, Bio.Blast, ssl, tkinter, askopenfilename, filedialog]. ####https://github.com/spawar2/DARTO####, collaboration with Dr. Lahiri, Sunway University, Malaysia. https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en^^^

• Neural-Networks-for-Ovarian-Carcinomas: [*2023:1], [**26]. This project was focused on utilizing machine learning tools for feature classification in Ovarian-Carcinomas:  [R: curatedOvarianData, tidyverse, boot, plyr, e1071].  ####https://github.com/spawar2/Neural-Networks-for-Ovarian-Carcinomas####, collaboration with Dr. Lahiri, Sunway University, Malaysia. https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en Wileys Chemical Biology and Drug Design, PUBLICATION: Common cancer biomarkers of breast and ovarian types identified through artificial intelligence                             Presentation, PPT^^

• Chest-X-ray-Neural-Nets: This project was focused on utilizing CNN’s for X-ray image classification: https://github.com/spawar2/Chest-X-ray-Neural-Nets [*2024:16;2023:4, 9; 2021: 17, 23], [**23, 29, 30, 37, 42], Demo, Poster Link, [https://github.com/rushikeshchopaderc https://in.linkedin.com/in/rushikesh-chopade-88470615b https://github.com/SurajK7/ https://in.linkedin.com/in/surajkumar1004 This project in collaboration with **Rushikesh Chopade, Presently with ChestAi, https://www.chestai.org/ **Suraj Kumar Undergraduate student: Indian Institute of Technology (IIT), Kharagpur, India. Project: CHEST-AI: AI tool for detection of lung diseases from chest X- ray data (Spring 2021). Poster Springer Computational Vision and Bio-Inspired Computing, Springer Intelligent Sustainable Systems, bioRxiv Paper Paper Paper Paper Paper  https://link.springer.com/chapter/10.1007/978-981-19-9819-5_49 https://link.springer.com/chapter/10.1007/978-981-19-7660-5_7 https://www.researchsquare.com/article/rs-1129014/latest.pdf 1,2,3,4,5,6,7,8,9,1,2,3,4,5,6,7,8 https://www.biorxiv.org/content/10.1101/2021.09.21.461307v1.abstract https://dl.acm.org/doi/abs/10.1145/3469213.3469214 http://20.169.253.49:5001/login https://aws.amazon.com/marketplace/seller-profile?id=seller-b6otd3wry7lkk https://bpb-us-w2.wpmucdn.com/campuspress.yale.edu/dist/7/3679/files/2023/10/ChestAi-300×167.png] (National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR), AI-enabled Devices for the Advancement of Personalized and Transformative Healthcare in South Carolina (ADAPT), RII Track-1 award funded project Role: Co-PI, (direct, 100%)) [Python: fastai.vision, torchvision.models, pandas, Path], collaboration with Dr. Narayanan, Johnson & Johnson, Pennsylvania, USA, Presentation, PPT, PPT^^

• BASELINe-Data: This project was focused on utilizing Bayesian estimation techniques for B and T cell profiling: Demo https://github.com/spawar2/BASELINe-Data######## [R Shiny: Tidyverse, UI, Server] https://yalegenomics.shinyapps.io/myapp/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931, collaboration with Dr. Kleinstein, Yale University, New Haven, Connecticut, USA.  https://medicine.yale.edu/lab/kleinstein/^

• Single-Cell-RNA-Analysis: This project was focused on single cell analysis techniques: https://github.com/spawar2/Single-Cell-RNA-Analysis & https://github.com/spawar2/Single-Cell-Analysis [Python: pandas, numpy, matplotlib.pyplot, string, anndata, defaultdict, OrderedDict, sklearn.preprocessing, TruncatedSVD], collaboration with Dr. Kozma, Georgia State University, Atlanta, USA. https://loop.frontiersin.org/people/2548907/overview, IF=5.1^^^

• COVID-SwabSeq-Testing-Run: This project was focused on testing Swab-Seq technique on COVID swab tests: https://github.com/spawar2/COVID-SwabSeq-Testing-Run [R: ggbeeswarm, MASS, speedglm, furrr, readxl, magrittr, tidyverse]^

• Object-Recognition-Python: This project was focused on object recognition using OpenCV: https://github.com/spawar2/Object-Recognition-Python [Python: numpy, os, urllib, sys, tarfile, tensorflow, zipfile, cv2, csv, time, collections, defaultdict, StringIO, matplotlib, PIL] Paper Demo^

• Quasi-quantum model for potentization: This project was focused on potentization analysis: https://github.com/spawar2/Shrodinger-Equation [R], Git, PPT^^^

• System-Level-Programming: https://github.com/spawar2/System-Level-Programming, https://csds.gsu.edu/^^^

• Data-Structures: https://github.com/spawar2/Data-Structures, https://csds.gsu.edu/^^^

• CS-Introduction: https://github.com/spawar2/CS-Introduction, https://csds.gsu.edu/^^^

• Advanced-Graphic-Algorithms: https://github.com/spawar2/Advanced-Graphic-Algorithms, https://csds.gsu.edu/^^^

• Fundamentals of Bioinformatics: https://github.com/spawar2/Bioinformatics-scripts, https://csds.gsu.edu/^^^

• CellLine Dependency Analysis: https://github.com/spawar2/CellLine-Dependency, https://csds.gsu.edu/^^^

• Anovos feature engineering process to increase efficiency tool contributor:  https://github.com/spawar2/Anovos-Contributor-User^^^

• Gene set enrichment analysis for RNA expression data: https://github.com/spawar2/Fold-Change-Comparisons [R: GenomicFeatures, clusterProfiler, enrichplot, ggplot2]^^^

• Kivy app interface development in R: https://github.com/spawar2/Kivy-GUI-R [Python: kivy.app, kivy.lang, Builder, Screen, ObjectProperty, Popup, Label, DataBase]^^^

• Structural-variant-Detection tool: https://github.com/spawar2/Structural-variant-Detection [R]^

• Program to Count-relative-frequency-of-amino-acids: https://github.com/spawar2/Count-relative-frequency-of-amino-acids [Python: itertools, product, combinations, Counter]^^^

• Text to voice conversion application: https://github.com/spawar2/Text-to-Voice-Application [Python: os, numpy, shlex, subprocess, sys, wave, deepspeech, Model, printVersions, timeit]^^^

• CT brain hemorrhage training: https://github.com/spawar2/CNN_Training [Python: matplotlib.pyplot, torch, time, numpy, collections, OrderedDict, torch.autograd, PIL, lr_scheduler, copy, json, os]^^

• Evaluating performance of regression and classification models with prognostic markers in lung carcinomas: https://github.com/spawar2/Regression-Lung-Carcinoma [R: randomForest, caret], collaboration with Dr. Lahiri, Sunway University, Malaysia. https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en Presentation, PPT, Springer Bioinformatics and Biomedical^^ EngineeringPaper

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• Hemorhage-Detection-CT-Scan: Poster, [**33], https://github.com/spawar2/Hemorhage-Detection-CT-Scan [https://github.com/CoolSubash https://np.linkedin.com/in/subash-neupane-aa07ba228?trk=public_profile_browsemap This project in collaboration with **Subash Neupane, [Python: numpy, pandas, pydicom, matplotlib.pyplot, math, cv2, tensorflow, keras] (Claflin University,  Orangeburg, South Carolina, USA.  Seed award funded project Role: PI, (direct, 100%)) Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Utilization of Machine Learning Techniques for Aiding Detection of Ischemic Stroke Lesion, Infarct Volumes, and Small-artery Occlusion https://www.claflin-computation.com/_files/ugd/81dd80_e12daf8e87c348c5a9347af693993739.pdf]^^

• Techniques of brain segmentation from CT scan: https://github.com/spawar2/Image_Segmentation [Python: pydicom, numpy, cv2, os, math, pylab, matplotlib, scipy, ndimage, skimage, morphology]^^

• Stroke risk stratification with neural nets: [**2023:36], [R: neuralnet] (Claflin University, Orangeburg, South Carolina, USA seed funded project) Role: PI, (direct, 100%)https://github.com/spawar2/Neural-Networks-Stroke [*2024:9][**2024:36] Springer Intelligent Sustainable Systems Paper, Presentation, PPT^^

• Nano-particles property prediction with random forests: [R Shiny: MissForest, randomForest, caret, UI, Server] Demo https://github.com/spawar2/RF-ENP#####, collaboration with Dr. Swinton, Kean University, Union, New Jersey, USA https://www.kean.edu/directory/derrick-swintonhttps://yalegenomics.shinyapps.io/appenp/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931^^

• Blood cancer expression analysis: https://github.com/spawar2/Blood-Cancer-Analysis [This project was in collaboration with Ms. A Agrawal, University of Connecticut, Special Program in Medicine (BS/MD), Experiential Learning Program Project: Identifying biomarkers between lymphoma and leukemia cancer patients (Fall 2021). CT STEM and Norwalk Science Fair (Poster)] [R: Affy, Limma] Title III and Special Initiative Office SEED Funding, Claflin University, Orangeburg, South Carolina, USA: Biomarker Identification for the Diagnosis of Chronic Lymphocytic Leukemia (CLL) (2024): (direct and indirect) Github, Students involved **Lierra Rivera Presently doctoral student at Clemson University, Bioengineering Program, **Germari Cull, **Mr. Adrian Lockwood  (URISE mentor), and https://github.com/WKalynn, https://github.com/lerivera2, https://github.com/AdrianL769, https://github.com/germari, **Kalyn Wesby. Role: PI, (direct, 100%), GitHub^^

• Claflin University SMART-HOME: https://github.com/spawar2/SMART-HOME-CLAFLIN [**39], Poster ,Poster

​        Poster Poster https://github.com/Claflin-SMART-HOME [R: shiny, DT]######https://yalegenomics.shinyapps.io/app-smart-home/^^

• [https://github.com/eniolla https://www.linkedin.com/in/priscilla-fatokun-35007119a https://github.com/mayor90/thesis https://campuspress.yale.edu/shrikantpawar/files/2023/12/SCICU-research-poster.pptx This project in collaboration with **Mr. Owalabi Oluwamayowa (South Carolina Independent Colleges & Universities SCICU award funded project Role: PI, (direct, 100%)),  **Priscilla E. Fatokun (South Carolina Independent Colleges & Universities SCICU award funded project), Undergraduate student: Claflin University, South Carolina, USA. (Fall 2023). Project: SMART-HOME proposal “collection and processing of health-care data for African-American subjects from wrist wearable devices. https://campuspress.yale.edu/shrikantpawar/files/2023/12/SCICU-research-poster.pptx https://campuspress.yale.edu/shrikantpawar/files/2024/02/Priscilla-Research-Presentation-0b920a0c624e2982.pptx], collaboration with Dr. Liles, Claflin University, Orangeburg, South Carolina, USA.  http://www.drkliles.com/STARlab/ https://github.com/Mayor90 https://github.com/eniolla^^

• ChatGPT Testing:  [Python: os, time, datetime, openai] https://github.com/spawar2/ChatGPT-Testing [https://github.com/bpritish https://www.linkedin.com/in/pritishbhave This project in collaboration with P Bhave, Senior Software Engineer, Walmart. Analyze ChatGPT’s codex to determine it’s viability to identify basic issues with provided Python code using OpenAI’s code model, current `code-cushman-001`], [**44], Overview PPT, Presentation^^

• Prostrate-Cancer-Biomarker-Analysis: https://github.com/spawar2/Prostrate-Cancer-Biomarker-Analysis https://www.linkedin.com/in/zion-ratchford-07514b1b9 This project in collaboration with **Zion Ratchford, Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). https://campuspress.yale.edu/shrikantpawar/files/2024/04/Zion-Presentation-80fd6d81d5b4f75b-rotated-e1712021318501-225x300.jp, https://campuspress.yale.edu/shrikantpawar/files/2024/01/Final-Prospectus-Edited-7e17c09b3e8c4813.pdf,^^ https://campuspress.yale.edu/shrikantpawar/files/2024/04/ROLE-CIRCULATION-BIOMARKERS-IN-PROSTATE-CANCER-DIAGNOSIS-4dbb44b57f793d6a.pptx [R: edgeR, hgu133plus2.db, tidyverse, Affy].

• Linkedimm: BioMed Central BMC Bioinformatics, IF=5.1 Paper https://github.com/spawar2/Linkedimm [Python: plotly, tidyverse, htmlwidgets, plotly, tidyverse, htmlwidgets], collaboration with Dr. Kleinstein, Yale University, New Haven, Connecticut, USA. https://medicine.yale.edu/lab/kleinstein/ Dr. Kei cheung, https://medicine.yale.edu/profile/kei_cheung/?tab=bio^^

• Institutional Development Award (IDeA) Networks of Biomedical Research Excellence (INBRE) Research Education of Teachers National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR)-RET,: Machine learning applications for studying check-point genes expressed in ten different human cancer types. https://github.com/spawar2/NSF-INBRE-EPSCoR-RET [ https://github.com/ethaharikanaidu This project in collaboration with ******Harika Baidu, teacher at Bamberg Ehrhardt High School (Summer 2022). Machine learning applications for studying check-point genes expressed in ten different human cancer types. Machine learning applications for studying check-point genes expressed in human Ovarian cancers. https://www.claflin-computation.com/_files/ugd/81dd80_1ad94ed63c6a49c887177419bdb46567.docx?dn=Etha%20project%20report.docx] [R: edgeR, hgu133plus2.db, tidyverse]^^

• TF–IDF-term frequency–inverse document frequency: [Python] https://github.com/spawar2/term-frequency-inverse-document-frequency^^^

• National Science Foundation SCICU: Natural Language Processing (NLP) for optimizing career advancement prospects: https://github.com/spawar2/NSF-SCICU-2022. Claflin University, Orangeburg, South Carolina, USA student Joshua Kiprano, , Presently software engineer at Atlassian. (South Carolina Independent Colleges & Universities SCICU award funded project) App Deploy: https://joshuakiplimo-resparse-resumematch-6a8pxp.streamlit.app/ Poster Link^^

• Single-Cell-MA-plots-Crustacean-Species: Public Library of Science, IF=5.1 PLoS ONE Paper, [R: Deseq2, ggplots]. https://github.com/spawar2/Single-Cell-MA-plots-Crustacean-Species, collaboration with Dr. Kozma, Georgia State University, Atlanta, USA. https://loop.frontiersin.org/people/2548907/overview^^^

• miRNA-analysis: Elsevier Data in Brief Paper https://github.com/spawar2/miRNA-analysis [R: DESeq2, tidyverse], collaboration with Dr. Christain, University of Barcelona, Spain^^^ https://www.ub.edu/farmaco/en/pharmacognosy/research/neuropharmacology_in_aging_and_neurodegeneration/6/

• Internship: https://github.com/spawar2/INTERNSHIP [2024:**41], [This project in collaboration with Yash Singh, Sai and Mohit, Georgia Tech, Atlanta, USA. Biomarker discovery in prostrate, lung and breast cancers (Spring 2024). https://github.com/yashsingh43 https://github.com/AbhayR43 https://github.com/Msai32005 https://github.com/rrchada https://github.com/arnavmadderla] [R: Tidyverse, ggplots]. Poster Link ^^

• Traffic-Counter-ML: [Python: os, numpy, cv2, mrcnn.config, mrcnn.model, MaskRCNN, pathlib, twilio.rest, Client, kivy, App, Label, GridLayout, TextInput, Widget, BoxLayout, random] https://github.com/spawar2/Traffic-Counter-ML^^

• Calcium-Interactomes: [R: CytoHubba, Cytoscape, String, GSEA] Nature Publishing Group NPG Scientific Reports Paper https://github.com/spawar2/Calcium-Interactomes, collaboration with Dr. Yang, Georgia State University, Atlanta, USA https://cas.gsu.edu/profile/jenny-j-yang/ Dr. Rakshya-Gorkhali https://www.researchgate.net/profile/Rakshya-Gorkhali^^^

• Harr-Fisc-Transformations-Microarray  [R] : [*2013:4], [**16, 17, 18] BioMed Central BMC Bioinformatics, IF=4.1 Paper, https://github.com/spawar2/Harr-Fisc-Transformations-Microarray, collaboration with Dr. Rinehart, Western Kentucky University, Bowling Green, Kentucky, USA  https://www.wku.edu/artp/webpages/bisc_dir.php^^^^

• 2nd CMI-PB Prediction challenge: https://github.com/spawar2/2nd-CMI-PB-Prediction-challenge/tree/main^^

• Binary-Search-Tree-In-Java-Implementation  [Java]: https://github.com/spawar2/Binary-Search-Tree-In-Java-Implementation^^^

• HSET-Ovarian-Cancer-Biomarker: BioMed Central BMC Journal of Ovarian Research, IF=5.1 Paper,  [R: BGmix],  [*2017:1, 2016:1], [**12]. https://github.com/spawar2/HSET-Ovarian-Cancer-Biomarker, collaboration with Dr. Aneja, Georgia State University, Atlanta, USA https://biomedical.gsu.edu/ritu/ https://sites.gsu.edu/bgsa/^^^

• Comparative-analysis-endemic-Coronaviruses: [R: ggplots] Taylor and Francis Libyan Journal of Medicine, IF=3.1 Paper https://github.com/spawar2/Comparative-analysis-endemic-Coronaviruses, collaboration with Dr. Bagasra, Claflin University, Orangeburg, South Carolina, USA  https://www.claflin.edu/academics-research/faculty-research/meet-our-faculty/omar-bagasra^^

• National Longitudinal Study of Adolescent to Adult Health analysis shows correlations between fast food consumption with physical and mental health of adults facing food insecurities This project was in collaboration with *Mr. Madhu Gottti, Undergraduate student, Stanford University, California, USA. Amity Public School, Connecticut, USA. Experiential Learning Program Project: Identifying biomarkers between lymphoma and leukemia cancer patients (Fall 2021). Los Osos High School, California. https://github.com/spawar2/National-Longitudinal-Study [R: Tidyverse, ggplots], Github ^^

• Acid Ceramidase in colon cancer, with Dr. Harikumar, RGCB [R: Deseq2, ggplots], Github ^^

• Speech to text conversion using BytesIO: [Python: BytesIO, b64decode, google.colab, IPython.display] https://github.com/spawar2/Speech2Text ^^

• Diabetic Retinopathy Detection [Python: tensorflow, keras, layers, numpy, pandas, random, os, shutil, matplotlib.pyplot, imread, keras.preprocessing.image, ImageDataGenerator, categorical_accuracy, sklearn.model]: https://github.com/spawar2/Diabetic-Retinopathy-Neural-Networks/tree/main^^

• Atrial Fibrillation Detection [Python: numpy, pandas, seaborn, matplotlib.pyplot, sklearn.metrics, classification_report, sklearn.model_selection, f1_score, confusion_matrix, to_categorical, class_weight, OS, warnings]: https://github.com/spawar2/Atrial-Fibrillation-Neural-Networks^^

• Murmur-Neural-Network: [Python: warnings, matplotlib, pylab inline, tensorflow, Keras, os, pandas, librosa, glob, matplotlib.pyplot] https://github.com/spawar2/Murmur-Neural-Network^^

• Artificial Intelligence Based Framework for Predicting the Spread of Climate Change Related Infectious Diseases: (Scired: Scientific Research & Development) https://github.com/spawar2/SCIRED-Analysis, collaboration with Dr. Desowky, Claflin University, Orangeburg, South Carolina, USA https://desoky.com/^^

• Neural networks on CTA in peripheral arterial diseases (PAD) [Python: pytorch, tensorflow]: https://github.com/spawar2/CTA-PAD-Neural-Nets (National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR), AI-enabled Devices for the Advancement of Personalized and Transformative Healthcare in South Carolina (ADAPT), RII Track-1 award funded project Role: Co-PI, (direct, 100%)): https://scepscor.org/adapt-in-sc-thrust-2/. This project in collaboration with https://github.com/Caliese **Caliese J. Beckford, https://www.linkedin.com/in/caliese-beckford-25851821b/?originalSubdomain=jm (Graduate student), Undergraduate student: **Mr. Sabb, Dinari, (National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR), AI-enabled Devices for the Advancement of Personalized and Transformative Healthcare in South Carolina (ADAPT), RII Track-1 award funded project Role: Co-PI, (direct, 100%)), Undergraduate student: Claflin University, Orangeburg, South Carolina, USA (Fall 2023). [**2024:47], GitHub, Poster 1, Poster 2. Machine learning application for biomedical device development. https://www.linkedin.com/in/dinari-sabb-0b62b51ba https://github.com/DinariSabb^^

• Generative AI ChatBot using gpt-3.5-turbo engine [Python, HTML: numpy, pandas, pydicom, matplotlib.pyplot, math, cv2, tensorflow, keras, OPENAI, model: gpt-4-turbo]: https://github.com/spawar2/Generative-AI-ChatBot-using-gpt-3.5-turbo-engine^^

• Summer-Undergraduate-Research-Internship-2024:  [R: edgeR, hgu133plus2.db, tidyverse, Affy]  https://github.com/spawar2/Summer-Undergraduate-Research-Internship-2024/tree/main This project in collaboration with Felicia Forrester: https://www.linkedin.com/in/feliciaforrester, **Subash Neupane, https://github.com/CoolSubash https://np.linkedin.com/in/subash-neupane-aa07ba228?trk=public_profile_browsemap, **Amrinder Singh, **Bimal, **Ian https://www.linkedin.com/in/amrinder-singh-b74426251, Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Machine Learning applications in computer aided diagnosis (CAD) hemorrhage, brain tumor, stroke, and cervical fractures. https://github.com/FelForr; https://github.com/AmrinderGlLL; https://github.com/bimalitani100; https://github.com/IanAAdams; https://github.com/jybvby^^https://campuspress.yale.edu/shrikantpawar/files/2024/07/Abstract-1.doc https://campuspress.yale.edu/shrikantpawar/files/2024/07/abstract-copy.doc https://campuspress.yale.edu/shrikantpawar/files/2024/07/Abstract-for-summer-research.doc https://campuspress.yale.edu/shrikantpawar/files/2024/07/Abstract.doc https://campuspress.yale.edu/shrikantpawar/files/2024/07/Amrinder_Singh_Presentaion_Summer_2024.pptx https://campuspress.yale.edu/shrikantpawar/files/2024/07/Cervical-Fracture-Detection-Using-CNN-Approach.pptx https://campuspress.yale.edu/shrikantpawar/files/2024/07/Ian-PPT.ppt https://campuspress.yale.edu/shrikantpawar/files/2024/07/Presentation.ppt https://campuspress.yale.edu/shrikantpawar/files/2024/07/SNSM-2024-Summer-Research-Booklet.pdf https://campuspress.yale.edu/shrikantpawar/files/2024/07/SNSM-Summer-Undergraduate-Research-Program.pdf [**2024:45].

• Hemoglobin and cancerous mole monitoring using near-infrared spectroscopy (NIRS), image analysis techniques, and machine learning: https://github.com/spawar2/NIRS-Machine-Learning. In collaboration with *Aryan Shrivastav, sophomore at Amity Regional High School in Woodbridge, Connecticut, USA. https://github.com/AryanS-0101^^

• Artificial Intelligence in Genomics, Bridging Molecular Diagnostics from Bench to Computer. 2024 National Hands-on Advanced Genomics Workshop, Gujarat State Biotechnology Mission (GSBTM) and Department of Science and Technology, Government of Gujarat: https://github.com/spawar2/Workshop-Artificial-Intelligence-in-Genomics-2024 Collaboration with Dr. Lahiri, Sunway University, Malaysia: https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en: https://github.com/spawar2/Workshop-Artificial-Intelligence-in-Genomics-2024^^PPT, Github, Presentation, Certificate​

• Hemoglobin stimulates vigorous growth of Streptococcus pneumoniae and shapes the pathogen's global transcriptome: https://github.com/spawar2/NGS-Analysis-Fahmina Collaboration with Dr.  Eichenbaum, Georgia State University, Atlanta, USA, Nature Publishing Group: Scientific Reports, IF=4.9 Article link^^^​

• Mutation analysis in Severe acute respiratory syndrome coronavirus (SAR COV): [R]. https://github.com/spawar2/Mutation-Analysis-SARS-COV .Collaboration with Dr. Alex. Zelikovsky, Georgia State University, Atlanta, USA. https://alan.cs.gsu.edu/NGS/?q=content/csc2510-theoretical-foundations-computer-science-0^^^

• Sciencegateways-SGX3-s-HackHPC-Team-Claflin, adapting High-Performance Computing (HPC) tools in courses, [Python]: https://github.com/spawar2/Sciencegateways-SGX3-s-HackHPC-Team-Claflin/tree/main^^^Poster

• Transient-Ischemic-Attack-prediction-Machine-Learning, [R]: https://github.com/spawar2/Transient-Ischemic-Attack-prediction-Machine-Learning Transient Ischemic Attack (TIA) prediction using support vector machines (SVM), Collaboration with Dr. A. Hande, Department of Neurological Surgery, Fortis Hospital, Navi Mumbai. https://www.drashokhande.com/about-us^^

• ^^^Georgia State University, Atlanta, USA.

• ^^^^Western Kentucky University, Bowling Green, Kentucky, USA.

• ^^Claflin University, Orangeburg, South Carolina, USA. 

• ^Yale University, School of Medicine, Department of Genetics, Yale Center for Genome Analysis (YCGA) , Connecticut, New Haven, USA.